PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000032.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 133aa    MW: 14679.2 Da    PI: 7.5996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000032.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-182173256
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr...krfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +g+++AeIrd       +   +r++lg+f +aeeAa+a+++a+ + +g+
  Itr_sc000032.1_g00022.1 21 RYRGVRKRP-WGKYAAEIRDmT-----KpaaARVWLGTFNSAEEAARAYDRAAFATRGH 73
                             6********.**********55.....2334**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.512180IPR001471AP2/ERF domain
PfamPF008472.4E-122173IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202181IPR016177DNA-binding domain
SMARTSM003807.9E-302186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-282182IPR001471AP2/ERF domain
CDDcd000185.58E-262181No hitNo description
PRINTSPR003673.0E-112233IPR001471AP2/ERF domain
PRINTSPR003673.0E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MADHNTGKTV DGGSGSGGEV RYRGVRKRPW GKYAAEIRDM TKPAAARVWL GTFNSAEEAA  60
RAYDRAAFAT RGHLAILNFP EEYNLPRSSS HFYSASATSS SSSREVIEFE CLDDKVLEDL  120
LDYDQNPGKK NRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-32121294127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180342.15e-59PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T07e-51A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGSolyc03g005500.1.17e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-25Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]