PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000032.1_g00023.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 138aa    MW: 15131.8 Da    PI: 6.5197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000032.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-152171356
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             y+GVr+++ +g++ AeI+d   +g   r +lg+f++aeeAa+a+++a+  l+g+
  Itr_sc000032.1_g00023.1 21 YHGVRRRP-WGKFGAEIKDSALDG--GRQWLGTFDSAEEAARAYDRAAFGLRGH 71
                             89******.**********43354..899********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2322078IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-212079IPR016177DNA-binding domain
SMARTSM003801.7E-292084IPR001471AP2/ERF domain
PRINTSPR003672.0E-92132IPR001471AP2/ERF domain
PfamPF008476.6E-102171IPR001471AP2/ERF domain
CDDcd000185.54E-262179No hitNo description
Gene3DG3DSA:3.30.730.105.7E-272179IPR001471AP2/ERF domain
PRINTSPR003672.0E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEGTSSNNKG KAQQQKEEVM YHGVRRRPWG KFGAEIKDSA LDGGRQWLGT FDSAEEAARA  60
YDRAAFGLRG HLATLNFPHC YYHPSSASTP PPAAAAAADS SSVPAPAGKE VFEIEYFDDS  120
LLEQLLGEED QKKKRKLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-292112115114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180340.14e-65PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_019180341.14e-65PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3XM455e-46A0A1S3XM45_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009780511.11e-46(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]