PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000034.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 269aa MW: 30491.6 Da PI: 9.4468

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000034.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	20	65	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rWT+eE +l+ a ++ + +W ++a +++ g++ +++ + + Itr_sc000034.1_g00003.1 20 RWTKEENKLFESALAMIDERipdRWFKVADMIP-GKSVYDVLNQYKE 65 9******************************.*****999875 PP
2	Myb_DNA-binding	41.9	2.4e-13	117	161	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Itr_sc000034.1_g00003.1 117 PWTEEEHRRFLMGLQKYGKGDWRNISRNFVISKTPTQVASHAQKY 161 8***************************789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.54	16	70	IPR017884	SANT domain
SMART	SM00717	6.4E-7	17	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.61E-11	19	74	IPR009057	Homeodomain-like
CDD	cd00167	4.66E-6	20	67	No hit	No description
Pfam	PF00249	1.4E-6	20	65	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.918	110	166	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-17	112	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-19	113	165	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.4E-12	114	160	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	114	164	IPR001005	SANT/Myb domain
CDD	cd00167	8.17E-10	117	162	No hit	No description
Pfam	PF00249	1.8E-11	117	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MESLLISSPS WLIHQSKSTR WTKEENKLFE SALAMIDERI PDRWFKVADM IPGKSVYDVL 60 NQYKELVADV SNIEAGLVPI PGYLASPFAL QLVDDRGFEV HRKRGRSCDH ERKKGVPWTE 120 EEHRRFLMGL QKYGKGDWRN ISRNFVISKT PTQVASHAQK YFLRQHSGGK DKRRPSIHDI 180 TTVNVSDANL VASDTKHSLL DEKSQDVPVL VSRSASVPEM LGWNFPDDGA LMASVFSSPQ 240 GSQFVSYPSE IAYAKLGFQI PPTRYQIRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	113	RKRGRSCDHERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191872.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	5e-83	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2N9H1W5	1e-106	A0A2N9H1W5_FAGSY; Uncharacterized protein
STRING	EMJ20461	1e-103	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-84	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]