PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000034.1_g00039.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 133aa    MW: 14622.5 Da    PI: 8.6667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000034.1_g00039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-051638123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ F++   L  H+++H
  Itr_sc000034.1_g00039.1 16 YSCSFCKREFRSAQALGGHMNVH 38
                             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.42E-71342No hitNo description
Gene3DG3DSA:3.30.160.608.0E-41440IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-61639IPR007087Zinc finger, C2H2
SMARTSM003550.0061638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.241643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEDDDDKAAA WPPRSYSCSF CKREFRSAQA LGGHMNVHRR DRAKLKRSNN TMASSPPPIS  60
SSAIIFFQGN SAGDQKKGGC KRQRTAGGCG KTVSFMPVQV HSEDEEVEVV AGMRISRDSS  120
MEDIDLELRV GVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-151138229superman protein
2l1o_A8e-151138229Transcriptional regulator SUPERMAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191729.13e-66PREDICTED: uncharacterized protein LOC109186258
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-22zinc-finger protein 10