PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000034.1_g00044.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 210aa MW: 23811.8 Da PI: 4.0373

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000034.1_g00044.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.4	1.7e-36	7	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C+++Cv+apyf +q +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+v+ i++l+q Itr_sc000034.1_g00044.1 7 SCGACKFLRRRCSNECVFAPYFFYDQaASHFAAVHKVFGASNVSKLLLHLPVDSRSEAAITISYEAMARMQDPIYGCVAQIFALEQ 92 6*******************999978****************************************************** PP DUF260 86 qleqlkaelallk 98 ++++l +e++ ++ Itr_sc000034.1_g00044.1 93 EVASLMEEIENIE 105 *****998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.95	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-35	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRRCSN ECVFAPYFFY DQAASHFAAV HKVFGASNVS KLLLHLPVDS 60 RSEAAITISY EAMARMQDPI YGCVAQIFAL EQEVASLMEE IENIEKLMAY CACEGPEQQC 120 MVNDELLFFS EYNNMSINMN HNVTVPFLED SYANSTPYSQ MNMQNPPVNG WEDEIFFPFS 180 DSDISDIFNE TIDPNIYLQY QLVDNGNIYH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-31	3	113	7	116	LOB family transfactor Ramosa2.1
5ly0_B	9e-31	3	113	7	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192293.1	1e-154	PREDICTED: LOB domain-containing protein 33-like
TrEMBL	A0A1S4BHD4	1e-67	A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBL	A0A1U7UT89	1e-67	A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRING	XP_009757428.1	2e-68	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	6e-53	LOB domain-containing protein 33