PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000037.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 252aa    MW: 28116.9 Da    PI: 6.9434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000037.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-1358104354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h+e+ErrRR+riN  f +Lr+l+P        K++Ka+ L k++  Ik+L
  Itr_sc000037.1_g00007.1  58 RNHSEAERRRRERINGHFTTLRSLIPGT-----DKMDKAALLAKVISQIKEL 104
                              58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.94855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1158104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.41E-458106No hitNo description
SuperFamilySSF474591.57E-1458112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1559113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.44E-6143211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEFLGTFSEL CNEKYEFQGV MRNGLSSSSS LVLDSGKGEL VRAAQQGLKP EKALIALRNH  60
SEAERRRRER INGHFTTLRS LIPGTDKMDK AALLAKVISQ IKELRASAAE ATKEILVPMD  120
RDELRVEPQI GEFEGALYSI KASLSCEYKH ELLSDLRQAL DNLSLKTARA EIATLGSRMV  180
SVFVIIENEG NIEHEDTERR EFLASSIRQA LRSVLDKFYA SEELSSRNAL SSKRQRASFL  240
NPSSSSSLGD FC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193659.11e-109PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4BS571e-102A0A1S4BS57_TOBAC; transcription factor bHLH30-like
STRINGXP_009611307.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-33bHLH family protein