PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000037.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 271aa MW: 29141.2 Da PI: 6.1731

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000037.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	79	136	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY++eHnh+ Itr_sc000037.1_g00023.1 79 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYSSEHNHP 136 99**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-32	69	138	IPR003657	WRKY domain
PROSITE profile	PS50811	32.11	72	138	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	72	138	IPR003657	WRKY domain
SMART	SM00774	1.1E-36	77	137	IPR003657	WRKY domain
Pfam	PF03106	5.7E-26	79	136	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MMETRLHHNS SSCFHKQEEL SAGTSPENGV ESPLSGDEAA EVSTPSPRKR RGAQKRVVSV 60 PAGDGDGSRS KSEVYPPPDS WSWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRL 120 DPTMLLITYS SEHNHPHPTK IHHHYAAGTG TGATTSSSSA ATTPTDSAAD PGSPPKPAPK 180 ELSIFADPDP ENDTFPELVG GEMGWFSDVG PCCFMESATA VAGPTLCHDT DVALTLREED 240 QSLFGDLGEL PECSVVFRRC RVETPCYAGT G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-23	55	139	6	80	Disease resistance protein RRS1
5w3x_D	2e-23	55	139	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172670.1	1e-145	PREDICTED: probable WRKY transcription factor 69
Swissprot	Q93WV5	9e-64	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A1U8HBS2	1e-105	A0A1U8HBS2_CAPAN; probable WRKY transcription factor 65 isoform X2
STRING	XP_009593761.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	4e-56	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]