PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000037.1_g00038.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 234aa    MW: 25103.2 Da    PI: 6.5185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000037.1_g00038.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-21550449
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +n+ n qvtfskRr+g++KKA+ELS+LC+++v +i+fs+  k++ +
  Itr_sc000037.1_g00038.1  5 QNENNLQVTFSKRRAGLFKKASELSTLCGVDVGIIVFSPGKKVFSF 50
                             7999***********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002656.16E-31169No hitNo description
SMARTSM004321.7E-23153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.633154IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-23268IPR002100Transcription factor, MADS-box
PfamPF003198.7E-25450IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVKMQNENNL QVTFSKRRAG LFKKASELST LCGVDVGIIV FSPGKKVFSF GHPSVEAVVE  60
RFLGGNNDDD PVVVASPTEQ LIEAHRNARV RELSVELTRL EAMMESEKKR GEAIDEAVAA  120
NREAQGWIRG SHDELSLEQL RALKNGMENL MRETHQKAQQ LMAAMHENGF PFNPYASGGV  180
FSGGSLPFNS GVAGAHPCTS GGAAGASSSS YSVLTARDAS TSEGANLGIG RQFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169968.11e-121PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A328DLG94e-56A0A328DLG9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-43AGAMOUS-like 62