PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000037.1_g00039.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 25470.2 Da PI: 9.9201

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000037.1_g00039.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.6e-21	15	62	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r + +sn vtfskRr g++KKA+ELS+LC++e+a+i+fs+ k++ + Itr_sc000037.1_g00039.1 15 RMSKESNLLVTFSKRRSGLFKKASELSTLCGVEIAIIVFSPGKKVFSF 62 567889999********************************9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.4E-29	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.75	6	66	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.52E-31	7	75	No hit	No description
SuperFamily	SSF55455	1.24E-25	7	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-23	16	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009960	Biological Process	endosperm development
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MARKCKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKASEL STLCGVEIAI IVFSPGKKVF 60 SFGHPCVDSV VDRFLARSPP PAPPSAASNT SQLIEAHRNA SVRELNVQLM EILSQAELEK 120 KRGEELTKMR KESAGKWWWE SPVGELGLEE LEQLKVAMEE LKSGVGKQME KLVVEASNPN 180 LYFGGAAASS SSSKGLGLFD DANKGSSGLG LSVTPHHHLH GFANFGGYGG RGFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_B	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_I	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_J	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_A	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_B	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_C	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_D	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_I	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_J	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
5f28_A	2e-16	7	96	2	87	MEF2C
5f28_B	2e-16	7	96	2	87	MEF2C
5f28_C	2e-16	7	96	2	87	MEF2C
5f28_D	2e-16	7	96	2	87	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169980.1	1e-127	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	3e-63	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2N9GC17	3e-88	A0A2N9GC17_FAGSY; Uncharacterized protein
STRING	XP_006487058.1	7e-87	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-56	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]