PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000038.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 391aa    MW: 42640.5 Da    PI: 6.5115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000038.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-10238286355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Itr_sc000038.1_g00006.1 238 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 286
                              58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17233303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-11233290No hitNo description
Gene3DG3DSA:4.10.280.102.5E-16235303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7238286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGTEDNNNGD MGGLQHRGNV NISMAMSSES TFRSPTGMDS LPFCGSGWDP MVPVNQSLHY  60
PVAIDNQPMS STSHLVHHYP SGSDVVDMVP KVPAFGNEGF SDMVSSFGLP DCRLNYMHNI  120
GVGTNRAFSR GQHSQEDCLN LEEAAIGASP LGKKRRSSEA LSPSIASKNV EREQPKDPLG  180
DNSECSKEDE KKQKTEQNNS SSLRSKQAGK QVKDTSSSGE PPKENYVHVR AKRGQATNSH  240
SLAERVRRER ISERMRLLQE LVPGCNKITG KAVMLDEIIN YVQSLQQQVE FLSMKLATVN  300
PELNFDIERI LSKDILHAQG SNGALLGLGP GLNSPHPFPG APLGTFSNVP NTTPFHSLPQ  360
NVWENDLQSI LQMGFDSNSS LNNMGPNGNR S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174884.10.0PREDICTED: transcription factor bHLH74-like isoform X1
TrEMBLA0A314L7E01e-156A0A314L7E0_NICAT; Transcription factor bhlh74
STRINGXP_009590631.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-67bHLH family protein