PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000039.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 580aa    MW: 64883.8 Da    PI: 6.6741
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000039.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.2e-24228281155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++Wt +LH++Fv+av+++ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Itr_sc000039.1_g00015.1 228 KPRVVWTVDLHQKFVKAVNHI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 281
                              79*******************.9*******************************8 PP
2Response_reg57.66.9e-207616224109
                              EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
             Response_reg  24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                               +v+++  ++ea+ ll+e++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + + + ++ Ga d+l Kp+ ++el
  Itr_sc000039.1_g00015.1  76 LKVTTCGLATEAISLLRERRngFDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 160
                              48999999********999999*******************87754.558***********************************9 PP

                              HH CS
             Response_reg 108 vk 109
                              ++
  Itr_sc000039.1_g00015.1 161 RN 162
                              87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.45E-62048IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-392045No hitNo description
SMARTSM004482.5E-1921164IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.58322168IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.70E-2424167No hitNo description
PfamPF000721.7E-1676163IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.27E-2476180IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-3977175No hitNo description
SuperFamilySSF466891.29E-17226285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27227286IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-22228281IPR006447Myb domain, plants
PfamPF002498.7E-8230280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MESVMAGGIF LPRTETFPAG LRVLVVDDDP TWLKILEKML KKCSYEVTRE TYRHYYTQGC  60
ALGKPRLVTF AAKGPLKVTT CGLATEAISL LRERRNGFDI VISDVNMPDM DGFKLLELVG  120
LEMDLPVIMM SVDGETSRVM KGVQHGACDY LLKPIRMKEL RNIWQHVVRK RMQESRDIEN  180
HEGDQFDEAW MFNGIELQSG KKRKDFDYKF DERETSDSKS GDPSSVKKPR VVWTVDLHQK  240
FVKAVNHIGF DKVGPKKILD LMGVPWLTRE NVASHLQKYR LYLTRLQKEN ELKASSSGTK  300
HPDLSPKESS SSACLQNLVD VKPSKSTNGK YAFHGEKFCV QEVESRNYEG EVKAAASLST  360
AGVSRALVGE NCDSQKSISC SKASWASEVS KTGFKHEFKP QIQTEDNVNH LPSPKLPRNV  420
HLDQAQPLLN LAPHKDINPG EIKSKPGNIN TENPGVRTVS PLECAVDLLP AQPSQPQSCL  480
TNFQAFEQIP STTWSTKTPQ ILINGLESVE GNLFLGGGSW DKDFNAAALQ GEFHSPCVVG  540
PQSLELLDYS NTNLTGEIQP YFYDYEYAID PVIDHGLFIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19224286163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176689.10.0PREDICTED: two-component response regulator ARR11 isoform X2
SwissprotQ5N6V81e-119ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A0V0IG200.0A0A0V0IG20_SOLCH; Putative two-component response regulator ARR11-like
TrEMBLM1AVF10.0M1AVF1_SOLTU; Two-component response regulator
STRINGPGSC0003DMT4000312600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]