PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000041.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SAP
Protein Properties Length: 591aa    MW: 65222.9 Da    PI: 6.365
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000041.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP765.3e-24198193
                      SAP  1 mssssssssseseegseggeggdass......gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcst 82
                             mssss s  s+ e g  gg gg+  +      g s ++s+sr +aan+vwpePf+eala+qvaidasr++Grlaa  alan+fqv st
  Itr_sc000041.1_g00009.1  1 MSSSSPSAPSSPE-GFGGGDGGGGEEeeefdpGPSSSSSRSRMKAANGVWPEPFVEALAFQVAIDASRNIGRLAAGAALANMFQVFST 87
                             6666654433322.222222222222335656666777888888*******************************************9 PP

                      SAP 83 wravsrsdllw 93
                                  r   l 
  Itr_sc000041.1_g00009.1 88 PPYFVRITRLI 98
                             76666665555 PP
2SAP5882.5e-17921559178455
                      SAP  78 qvcstwravsrsdllwqrltrriWrrtkl..lrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdk 161
                               vcstwravsrsdllwq lt r+W+r ++   ++tWreeyiy+h+ta+nfr++ry y++l+fdp+ +d+    + l C +l lsd+
  Itr_sc000041.1_g00009.1 215 TVCSTWRAVSRSDLLWQSLTGRVWNRRRRgiQHNTWREEYIYWHQTANNFRMGRYIYTNLRFDPPPTDN---VNGLRCCRLVLSDH 297
                              69***********************996533699*******************************8877...4679999******* PP

                      SAP 162 ylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGal 247
                              +laaGf+dG+vrlf++ +r h+stf+p+ rdrlGrfs+avsGi++sd+rlvfa+ dGdihv vi  +g   +rra+lG vvndGal
  Itr_sc000041.1_g00009.1 298 HLAAGFSDGSVRLFHIPSRFHLSTFRPHYRDRLGRFSSAVSGIILSDTRLVFASQDGDIHVVVIGNPG--LPRRAHLGHVVNDGAL 381
                              ****************************************************************9955..9*************** PP

                      SAP 248 vdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqg 333
                              vdf+G+++WwvGlyaGvpGrafh+Wd+e+eelvfvGG+ltdPeavmGWh+ltelt  vGrvrvt++et+vaCtslrl+vfdlrnqg
  Itr_sc000041.1_g00009.1 382 VDFTGCDQWWVGLYAGVPGRAFHVWDGESEELVFVGGTLTDPEAVMGWHLLTELTAPVGRVRVTSQETVVACTSLRLIVFDLRNQG 467
                              ************************************************************************************** PP

                      SAP 334 vvlreeeerrGlivssldasneayvvvd.srGvatvrrvenleevcrfrvrg..aqrgvlgCvnggyalvyaggvlrvWeiekkeg 416
                               +++eee+  Gl+v+s+da ne+++v+d +rGva++rr+e+l e cr++vr+   ++ vl+C+nggyal+++ggv+rv+e+e    
  Itr_sc000041.1_g00009.1 468 FIIGEEEFPGGLMVGSFDADNESFMVADdHRGVASIRRAEDLGETCRLNVRSggFEGVVLACMNGGYALMCGGGVIRVFETEGGR- 552
                              ***********************98885279********************9888999***********************9966. PP

                      SAP 417 ylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                              y+ys+rer g+v+ +v ddrhva++++d++ihl+dfgaq
  Itr_sc000041.1_g00009.1 553 YVYSFRERLGDVHVIVGDDRHVAACTNDAIIHLWDFGAQ 591
                              *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.504.5E-5214283No hitNo description
SuperFamilySSF509789.16E-15279373IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.0E-12286366IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.103.0E-12423588IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509789.16E-15428587IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSSSSPSAPS SPEGFGGGDG GGGEEEEEFD PGPSSSSSRS RMKAANGVWP EPFVEALAFQ  60
VAIDASRNIG RLAAGAALAN MFQVFSTPPY FVRITRLIQL LIGLKLSLIL NLSQAEAVRD  120
KSREGPVKVW LSKSVLRYGG GTYEVTSTFR PFLDLPVLGI CLNLEDRKKG DVWFSIFPFP  180
LLCLVLFQNP HSLSAPIGLC DVGSSMAWDV WEWGTVCSTW RAVSRSDLLW QSLTGRVWNR  240
RRRGIQHNTW REEYIYWHQT ANNFRMGRYI YTNLRFDPPP TDNVNGLRCC RLVLSDHHLA  300
AGFSDGSVRL FHIPSRFHLS TFRPHYRDRL GRFSSAVSGI ILSDTRLVFA SQDGDIHVVV  360
IGNPGLPRRA HLGHVVNDGA LVDFTGCDQW WVGLYAGVPG RAFHVWDGES EELVFVGGTL  420
TDPEAVMGWH LLTELTAPVG RVRVTSQETV VACTSLRLIV FDLRNQGFII GEEEFPGGLM  480
VGSFDADNES FMVADDHRGV ASIRRAEDLG ETCRLNVRSG GFEGVVLACM NGGYALMCGG  540
GVIRVFETEG GRYVYSFRER LGDVHVIVGD DRHVAACTND AIIHLWDFGA Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162788.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-145SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1S3ZUZ21e-177A0A1S3ZUZ2_TOBAC; transcriptional regulator STERILE APETALA-like
STRINGXP_009596786.11e-178(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-139SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]