PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000042.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 266aa    MW: 30890.1 Da    PI: 8.4666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000042.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-1283135155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              rr+ h  +E+rRR+++ + +e Lr+llP       ++K s ++  +  v YIk+L+
  Itr_sc000042.1_g00004.1  83 RRALHRDVEKRRRNQMANLYESLRSLLPLqY---IKGKRSASDHMQASVSYIKDLE 135
                              7999*************************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-1380147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-1080139No hitNo description
PROSITE profilePS5088813.79582134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-983135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1083150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDNLWEIFPS IDYYNYLDDH PQLLHQIPSQ QPNGILSSQQ NYTMEDPTSW INPNNNDCGE  60
SFKKKRKRRE MKLQRGDDDD SCRRALHRDV EKRRRNQMAN LYESLRSLLP LQYIKGKRSA  120
SDHMQASVSY IKDLEKKVEG LHKHREKMMK MKNTSSSNMV VMEKSVEKEA KGAKWCCAND  180
ISVAVNKCED GIEILMNTRH RRDGVEYPLS ELLATLLRQG LNVVNCCYSH QEDRSLLRIQ  240
AQVNGWSDVD VAALQQKVVD VVIKPH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268KKKRKRR
26368KKRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152792.11e-104PREDICTED: transcription factor bHLH36-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-31bHLH family protein