PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000043.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 142aa MW: 15994.3 Da PI: 7.6361

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000043.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	21.4	2.6e-07	1	43	1	43
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaa 43 +++ L++cAe +s +d+++a++l++ l + sp +d+ +Rla Itr_sc000043.1_g00004.1 1 MRQFLISCAELISRSDFSAAHRLISFLASNTSPFADSSERLAC 43 5789*************************************96 PP
2	GRAS	100.7	2.2e-31	52	134	86	171
GRAS 86 evsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 ++P+++f+hltaNqaIlea++ +++Hi+Dfd+++G+QWp+L+qaLa+R +pp+lRiTg ++ + + l++tg+ LakfA Itr_sc000043.1_g00004.1 52 PITPFIRFTHLTANQAILEAIDDGqrNAIHILDFDVMHGIQWPPLMQALADR-YPPPKLRITGTEN----DMDILRRTGDGLAKFA 132 589****************97756899******************9.999******....************** PP GRAS 170 ee 171 ++ Itr_sc000043.1_g00004.1 133 HR 134 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	9.0E-5	1	43	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	23.682	1	142	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-29	52	134	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MRQFLISCAE LISRSDFSAA HRLISFLASN TSPFADSSER LACSVLLFVS QPITPFIRFT 60 HLTANQAILE AIDDGQRNAI HILDFDVMHG IQWPPLMQAL ADRYPPPKLR ITGTENDMDI 120 LRRTGDGLAK FAHRGSQRWL SQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-19	8	134	25	184	Protein SCARECROW
5b3h_D	3e-19	8	134	25	184	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183097.1	2e-64	PREDICTED: scarecrow-like protein 18
Swissprot	Q84MM9	1e-24	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A484K959	5e-57	A0A484K959_9ASTE; Uncharacterized protein
STRING	XP_009765072.1	6e-55	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	3e-25	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]