PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000044.1_g00042.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 254aa    MW: 27955.7 Da    PI: 4.1086
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000044.1_g00042.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.72.7e-1319112896
                    NF-YB   8 lPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                              lP + v r++k  l + +k   +s  ++a +   e +  fi ++++ a+d c + kr+t+n++d++ al ++ f ++ +pl++ l+
  Itr_sc000044.1_g00042.1  19 LPKTIVRRLVKDKLSQLSKdgeMSllREAHQAFSESARIFIHYLSAAANDVCMESKRQTMNAEDVFKALDEIEFSEFTDPLRASLE 104
                              78888899999887765552223333799********************************************************* PP

                    NF-YB  89 kyrelege 96 
                              ++r+ +++
  Itr_sc000044.1_g00042.1 105 EFRQKHSK 112
                              ***97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-2814150IPR009072Histone-fold
SuperFamilySSF471131.02E-2219145IPR009072Histone-fold
PfamPF008085.4E-81987IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MADEKEKGAA MPEVEVEDLP KTIVRRLVKD KLSQLSKDGE MSLLREAHQA FSESARIFIH  60
YLSAAANDVC MESKRQTMNA EDVFKALDEI EFSEFTDPLR ASLEEFRQKH SKRKAAASKS  120
VESNKKAKNE ETPAENGTSK KKQESTDNKK GKNTKPAVKE NGARKAQPVE SEEKDGEETN  180
ESEEDDVQEG NESGAEDGQE GNGSESEDEQ EGNGSEAENG QEENGSEAEV GIEGKDSEEE  240
DGQEDDESED TADD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A5e-121912818124DNA polymerase epsilon subunit D
5y27_A5e-121912818124DNA polymerase epsilon subunit D
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173629.11e-159PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A484L5363e-88A0A484L536_9ASTE; Uncharacterized protein
STRINGXP_009781709.15e-53(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-37nuclear factor Y, subunit B11