PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000044.1_g00054.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 411aa MW: 45925.6 Da PI: 7.1678

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000044.1_g00054.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.2	5.9e-48	27	174	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvkaeekewyfFskr 64 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp +v ++++ew+fFs+r Itr_sc000044.1_g00054.1 27 MFPGFRFSPTDEELISYYLKKKLEGSDRCV-EVISEVEIWKHEPWDLPGclscftlvfdltntiacvgavkSVIQSDNEWFFFSPR 111 579**********************777.99***********6689*****99999987764445889**** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ky++g++++rat+sgyWkatgk+++v+s +++++g+k+tLvf++grapkg++t+W+mhey + Itr_sc000044.1_g00054.1 112 GRKYPNGSQSRRATESGYWKATGKERNVKS-GSNVIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 174 **************************.99***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-51	23	191	IPR003441	NAC domain
PROSITE profile	PS51005	50.978	27	192	IPR003441	NAC domain
Pfam	PF02365	4.0E-26	29	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MGDGHASCSR NSNNNSTEIP LATASAMFPG FRFSPTDEEL ISYYLKKKLE GSDRCVEVIS 60 EVEIWKHEPW DLPGCLSCFT LVFDLTNTIA CVGAVKSVIQ SDNEWFFFSP RGRKYPNGSQ 120 SRRATESGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP KGQRTQWIMH EYCMNGRSQP 180 QDSMVVCRLR KNNEFHLNEA PRNQMNNSNA NNSMTALSGA DPAGSSGGVN AGESCSKECS 240 SSFNSHSVEQ IDSDSDSDSD EKLVNEISLH HPPGNQKDFF DAEDWFADIM KDDIIKLDDS 300 SLNPRLDALP ATTTKPEPEP QQNQATAAQG FTPDLFPFQG TANRRLRLRK EAARGEPFQL 360 DKQQLLPRRL VSMMSRGRIK HCSIYVCFLS LIILLFCCSG LLLRLENLMN K

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MGDGHASCSR NSNNNSTEIP LATASAMFPG FRFSPTDEEL ISYYLKKKLE GSDRCVEVIS  60
EVEIWKHEPW DLPGCLSCFT LVFDLTNTIA CVGAVKSVIQ SDNEWFFFSP RGRKYPNGSQ  120
SRRATESGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP KGQRTQWIMH EYCMNGRSQP  180
QDSMVVCRLR KNNEFHLNEA PRNQMNNSNA NNSMTALSGA DPAGSSGGVN AGESCSKECS  240
SSFNSHSVEQ IDSDSDSDSD EKLVNEISLH HPPGNQKDFF DAEDWFADIM KDDIIKLDDS  300
SLNPRLDALP ATTTKPEPEP QQNQATAAQG FTPDLFPFQG TANRRLRLRK EAARGEPFQL  360
DKQQLLPRRL VSMMSRGRIK HCSIYVCFLS LIILLFCCSG LLLRLENLMN K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	23	193	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	23	193	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	23	193	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	23	193	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-39	23	193	16	169	NAC domain-containing protein 19
3swm_B	1e-39	23	193	16	169	NAC domain-containing protein 19
3swm_C	1e-39	23	193	16	169	NAC domain-containing protein 19
3swm_D	1e-39	23	193	16	169	NAC domain-containing protein 19
3swp_A	1e-39	23	193	16	169	NAC domain-containing protein 19
3swp_B	1e-39	23	193	16	169	NAC domain-containing protein 19
3swp_C	1e-39	23	193	16	169	NAC domain-containing protein 19
3swp_D	1e-39	23	193	16	169	NAC domain-containing protein 19
4dul_A	2e-39	23	193	13	166	NAC domain-containing protein 19
4dul_B	2e-39	23	193	13	166	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	349	RRLRLRK
2	343	350	RRLRLRKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197806.1	0.0	PREDICTED: NAC domain-containing protein 60-like isoform X1
TrEMBL	A0A3Q7H0C4	1e-159	A0A3Q7H0C4_SOLLC; Uncharacterized protein
TrEMBL	M1A5E5	1e-159	M1A5E5_SOLTU; Uncharacterized protein
STRING	Solyc06g074170.2.1	1e-160	(Solanum lycopersicum)
STRING	PGSC0003DMT400015077	1e-160	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4154	22	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	8e-74	NTM1-like 8