PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000045.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 255aa    MW: 29716.1 Da    PI: 5.0319
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000045.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35261172102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF+++ F+
  Itr_sc000045.1_g00017.1  26 FLLKTYMLVEDPATDDVISWNDDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTNR---------WEFSNEMFR 102
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              kg+++ll++i+r+k 
  Itr_sc000045.1_g00017.1 103 KGERDLLCDIRRRKA 117
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3719110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.28E-3521115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5522115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLGPECDRQH QKSLLEYVRK SSPPPFLLKT YMLVEDPATD DVISWNDDGT AFVVWQPAEF  60
ARDLLPTLFK HSNFSSFVRQ LNTYGFRKVT TNRWEFSNEM FRKGERDLLC DIRRRKAWSN  120
KPNNNNNNNN NNAQSQDPPK NNKDANDEDQ RSSSTSSSSE YITLVDENKR LKEENGVLSS  180
ELTTMKRKCR DLLDLVSMYA ASSEKEEEEE EEEEVMRPPL MLFGVRLEVQ EEAERKRKRA  240
EINQTASLFL SQLCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B8e-22261154104Putative transcription factor
5d5x_B8e-22261154104Putative transcription factor
5d5x_E8e-22261154104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186738.11e-138PREDICTED: heat stress transcription factor B-3
SwissprotO222302e-76HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S4AR321e-116A0A1S4AR32_TOBAC; heat stress transcription factor B-3-like
STRINGXP_009617028.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-73heat shock transcription factor B3