PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000047.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 128aa    MW: 14056 Da    PI: 9.4195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000047.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-052444121
                             EEETTTTEEESSHHHHHHHHH CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                             + C+ Cg+ F+++  L  H+r
  Itr_sc000047.1_g00028.1 24 HICTVCGRLFNSRQALLGHMR 44
                             68******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-52147No hitNo description
PROSITE profilePS501579.8682449IPR007087Zinc finger, C2H2
PfamPF139129.1E-72445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MSRNNANGSS SFNSLPPAQP QQNHICTVCG RLFNSRQALL GHMRHNSSHG WRILYPHFFN  60
RGHLANVLRR PEIPVVGGQV AAAPLPPIAA PPVDNAPLAQ PEVLVELPDL NEPRQYRVPD  120
LNFPPPPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328DQD61e-18A0A328DQD6_9ASTE; Uncharacterized protein