PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000047.1_g00036.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 210aa    MW: 21913.3 Da    PI: 3.8826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000047.1_g00036.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005110132123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++Cg ++++   +  H+r+H
  Itr_sc000047.1_g00036.1 110 FACEICGARYPTEKAMFGHLRSH 132
                              78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0086110132IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-7110134IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725110132IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASGKETTVA SSSMGEGSGG SQKAAEGVTV AVAPPPSSSL PVPQPAPVED RDSPVPVPPM  60
ENVMEGDAPP LPLEPVAVEE GGDVVAAGEI APAGQAAGEI APAGQAAGDF ACEICGARYP  120
TEKAMFGHLR SHKDRGWRGA FSPPTFSIEE FAEYQEHLVK PEEEQLREIE AEERAAAGER  180
VVLDVDLNVE VAPVEEFILP DLNLPPPDED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A484MGR15e-27A0A484MGR1_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-10C2H2 family protein