PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000047.1_g00055.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 258aa MW: 29336.8 Da PI: 8.9288

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000047.1_g00055.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.1	1.9e-45	5	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgk.rknratksgyWk 84 pGfrFhPt+eel+++yL+ v++kk + ++i ++iy+++PwdLp k+ ++ +e+ewyfF+ rd+k+ g+ ++nr+t +g+Wk Itr_sc000047.1_g00055.1 5 LPGFRFHPTEEELLNFYLRSAVNAKKPRS-DIIGFLNIYQHDPWDLPgKASEGqGEREWYFFVARDRKHGGGNgKANRTTGNGFWK 89 59**********************888.99***********5433333677********975439999**** PP NAM 85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+d+++ s+ ++++ g+kktLvfy+grap+g++tdWvm+e+rl Itr_sc000047.1_g00055.1 90 ATGSDRPIRSNspseGRKVLGMKKTLVFYQGRAPRGRRTDWVMNEFRL 137 *****9989888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-51	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	52.707	4	157	IPR003441	NAC domain
Pfam	PF02365	4.9E-24	6	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEVQLPGFRF HPTEEELLNF YLRSAVNAKK PRSDIIGFLN IYQHDPWDLP GKASEGQGER 60 EWYFFVARDR KHGGGNGKAN RTTGNGFWKA TGSDRPIRSN SPSEGRKVLG MKKTLVFYQG 120 RAPRGRRTDW VMNEFRLSDN TTCSLKEDVV LCKVYRKATS FKELEQKSLK EEQGYAVAAS 180 PTPASGGYGV HLKDFESTFF HVPTISSDQE SNHDKAQKFS ALYAKHGFVQ QEDALSEEVD 240 SLGNLFQVRD NWSLYAMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-41	6	163	17	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172355.1	1e-149	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-71	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2Z5HVK7	0.0	A0A2Z5HVK7_IPOBA; NAC5 protein
STRING	GLYMA11G10230.1	1e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-73	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]