PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000049.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 240aa    MW: 27026.6 Da    PI: 8.4588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000049.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.7e-062573655
                             HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             + +E++RR+ ++  ++ L +llP+     + + +   + + +Av+YIk Lq
  Itr_sc000049.1_g00015.1 25 KDVEKKRRETLKFLYNHLFSLLPThH--ISPGTMALPDQVHEAVNYIKTLQ 73
                             689*********************55..344558889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.9021972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-82394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-92494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRMQSRRSSA NTAANVEMPP KLERKDVEKK RRETLKFLYN HLFSLLPTHH ISPGTMALPD  60
QVHEAVNYIK TLQNQLEKSK QKKQELLSEQ QIIRIPNTTI PRKRPHYYSS SSSSSSSCSN  120
STSKQPLIQI LDIGPDIDVV LIDGLEDIAA FHNIIRTLHQ HGLEVATAIF QPRGNSTLQI  180
LHQQGFGGTT AKTVYEKLKQ AAVNGSSGSE PESLDSWDFD IWGFPILETS QEQLQNPPPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169641.12e-96PREDICTED: transcription factor bHLH118-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-10bHLH family protein