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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000049.1_g00016.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 248aa MW: 28290.2 Da PI: 7.47 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 27.4 | 6.3e-09 | 25 | 72 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ +E++RR++++s + L +llP++ + ++++s + L ++ +YIk L+
Itr_sc000049.1_g00016.1 25 KYIEKNRRNHLKSLYTDLFSLLPTP--QMQERMSLPDQLDETAKYIKCLE 72
569*********************7..59999***************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.141 | 19 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.96E-11 | 22 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.8E-10 | 24 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.2E-5 | 25 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.0E-4 | 25 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 9.02E-6 | 27 | 76 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence Send to blast |
MGREKGQSSR LTITTKTTPP KLERKYIEKN RRNHLKSLYT DLFSLLPTPQ MQERMSLPDQ 60 LDETAKYIKC LEQQLEKSRQ KKEELVKKES RKRPNNSSCR NCMAGGEQSE APHIQVLDTS 120 PGMSVVLING LESISQFHSI IRVLHKQQGL EVTNATFQIH GNSTLQIVHE QVGKLEMGMI 180 CERLKQVIKG CPGGEAIESS EPLNSWDYDI EHDNLGFPIL EQFLVQCQNP PPSFFWTAGN 240 NEYYCAQN |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019172370.1 | 1e-149 | PREDICTED: uncharacterized protein LOC109167721 isoform X1 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5297 | 14 | 27 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 2e-26 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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