PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000049.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 225aa    MW: 25443.1 Da    PI: 8.694
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000049.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.62.4e-349102194
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCa+Ck++r+kC+++Cvlap fpae+ ++f++vhk+FG+snv+k++++l+eeer +a++slv+eA +r++dPv G +g ++++ ++
  Itr_sc000049.1_g00027.1   9 ACASCKHQRKKCTEKCVLAPFFPAEKGREFQAVHKVFGVSNVTKMVRNLKEEERGRAVESLVWEAICRQNDPVLGPFGEYRRVYEE 94 
                              7************************************************************************************9 PP

                   DUF260  87 leqlkael 94 
                              l+  k++ 
  Itr_sc000049.1_g00027.1  95 LKLYKSQY 102
                              99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5378109IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-339102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQRSNGTTAC ASCKHQRKKC TEKCVLAPFF PAEKGREFQA VHKVFGVSNV TKMVRNLKEE  60
ERGRAVESLV WEAICRQNDP VLGPFGEYRR VYEELKLYKS QYEPTGMVIG WNNAAPAANN  120
NDGRTTTNNN NNIVHNNNDN NNNNNNSLNY IHSNGNNSVV GYNNYPINHP QNFEKLRRES  180
DNGSTVILPA RQHPINGFNQ QYFIAGQYNP ADTKSMESSL WDGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1910861288LOB family transfactor Ramosa2.1
5ly0_B1e-1910861288LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171921.11e-126PREDICTED: LOB domain-containing protein 2-like isoform X1
TrEMBLA0A1S4ARL95e-82A0A1S4ARL9_TOBAC; LOB domain-containing protein 2-like
STRINGXP_009619412.12e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-45LOB domain-containing protein 2