PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000051.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 252aa MW: 26967.1 Da PI: 8.0062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000051.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Itr_sc000051.1_g00019.1 74 YTCTFCRREFRSAQALGGHMNVH 96 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-6	71	101	No hit	No description
SMART	SM00355	0.0066	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.157	74	101	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-5	74	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MAAQLGLFSV SHQLQNLVES QLQPPPPPSA GATTGYWMRN MKNAAAAAED EDSWEIRAFA 60 EDTGNNATWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHHAPPRP SVVPPHFPSP 120 AAAALFPPQE IVANASLCLL YSLPNPNAAA AFSPAAVKPC SVNSSPTLLS ISPFATTHNL 180 PSLNFPATTQ FIAASSLKVP AESSQAASNN NNNYSNNGTR KREAAIEEQL ELDLELRLGR 240 GSSSSSSSSP PP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	69	96	2	29	superman protein
2l1o_A	2e-13	69	96	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156059.1	1e-121	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1U8F631	3e-68	A0A1U8F631_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3AFF7	3e-68	A0A2G3AFF7_CAPAN; zinc finger protein JAGGED
STRING	POPTR_0003s09000.1	1e-62	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5953	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-26	C2H2 family protein