PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000053.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 256aa    MW: 27904.2 Da    PI: 7.7151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000053.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018728223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             kC+ C k F +   L  H+r+H
  Itr_sc000053.1_g00017.1  7 KCKLCWKEFANGKALGGHMRSH 28
                             7********************9 PP
2zf-C2H211.50.00092175197123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp Cgk F +   L  H r+H
  Itr_sc000053.1_g00017.1 175 HECPFCGKIFGSGQALGGHKRSH 197
                              79**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951633IPR007087Zinc finger, C2H2
SMARTSM003550.23628IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-7730IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-8122197No hitNo description
PROSITE profilePS501579.286123150IPR007087Zinc finger, C2H2
SMARTSM003552123145IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-4123146IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4173198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845175202IPR007087Zinc finger, C2H2
SMARTSM003550.034175197IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-10175199IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAMEMQKCKL CWKEFANGKA LGGHMRSHLA PLPLPPPKTP PENQYSGGVD PTRKPTQGRS  60
KRARRLFVSE ENEKSSDQGA KNEEAETVTE ENIAMCLLML SDDVRGDSGT IKQRKTSKDK  120
ENFRCEICNG VFKCSQALGS HRTAHRNKTM NAGAGGFDRE KLRNLGGENG GKRLHECPFC  180
GKIFGSGQAL GGHKRSHSSS GSAGSGSCSS KLDESLMVDS NPDYDDVLNT MIDLNFPAPV  240
EEDNRDLSQP QLSVDS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156008.11e-92PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A328E9Q12e-47A0A328E9Q1_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-32C2H2-like zinc finger protein