PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000055.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 253aa MW: 28172.6 Da PI: 6.6201

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000055.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.6e-40	5	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksg 81 lp GfrF Pt+eelv++yL++k++g + +++ vi+ v+iy++ P +Lp+ ++++++w++F++ +++ a+g ++nr t++g Itr_sc000055.1_g00009.1 5 LPLGFRFYPTEEELVSFYLRRKLQGATsADIDLVIPVVNIYHHSPCHLPQvageLSRGDSEQWFYFIPGEENRARGGKPNRLTRDG 90 699********************995556556***********645633333666********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+ v+s+++e +g k+t+vf++grap g++t+W m+ey++ Itr_sc000055.1_g00009.1 91 YWKATGSPSFVYSSNNEIIGEKRTMVFHTGRAPGGTRTQWKMNEYKA 137 *******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-42	2	172	IPR003441	NAC domain
PROSITE profile	PS51005	42.228	5	172	IPR003441	NAC domain
Pfam	PF02365	6.7E-21	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MMENLPLGFR FYPTEEELVS FYLRRKLQGA TSADIDLVIP VVNIYHHSPC HLPQVAGELS 60 RGDSEQWFYF IPGEENRARG GKPNRLTRDG YWKATGSPSF VYSSNNEIIG EKRTMVFHTG 120 RAPGGTRTQW KMNEYKAAAQ VVGGQGGASA SCDAIADLKL CHEFSLCRLY KKSKCDRSFD 180 RRPPEMAAAT GAGGGAPPPP PQHNHLPAAL MERSSSSSTA DDYATPPSAM EYQYYWDTCA 240 PLWDWEDLNI NLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-27	4	172	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-27	4	172	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-27	4	172	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-27	4	172	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-27	4	172	19	168	NAC domain-containing protein 19
3swm_B	7e-27	4	172	19	168	NAC domain-containing protein 19
3swm_C	7e-27	4	172	19	168	NAC domain-containing protein 19
3swm_D	7e-27	4	172	19	168	NAC domain-containing protein 19
3swp_A	7e-27	4	172	19	168	NAC domain-containing protein 19
3swp_B	7e-27	4	172	19	168	NAC domain-containing protein 19
3swp_C	7e-27	4	172	19	168	NAC domain-containing protein 19
3swp_D	7e-27	4	172	19	168	NAC domain-containing protein 19
4dul_A	8e-27	4	172	16	165	NAC domain-containing protein 19
4dul_B	8e-27	4	172	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019193389.1	1e-161	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A1U7YC31	2e-85	A0A1U7YC31_NICSY; NAC domain-containing protein 90-like
STRING	XP_009801687.1	4e-86	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-67	NAC domain containing protein 90