PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000056.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 252aa    MW: 27239.9 Da    PI: 6.2596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000056.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.5e-051531921155
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              rR +++ +++  L++l+ +      +K + a++L++A+  Ik Lq
  Itr_sc000056.1_g00007.1 153 RRSQKLTDKITALQKLVSPY-----GKTDTASVLQEACISIKALQ 192
                              8999**************99.....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.118142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-4153196No hitNo description
Gene3DG3DSA:4.10.280.102.3E-6153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-7153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKNAILPQVS SQIYSFGCSE AAGFPDLPSQ IESELNVFSG DGFCIDSNLY TNQDNLGGVL  60
AFCSESQIIY QSEPPSSMAV KRLGCPLGLD RGSTLPASLP VGFCEFYQDV HITKKTRKRS  120
SPDSAESIAE RAGKNVLIEE TTPRIRRGRV PARRSQKLTD KITALQKLVS PYGKTDTASV  180
LQEACISIKA LQDQIQNLCI ASHGHSDQKS GDENEGGLRN KGLCLVPVSL LQTVADQDLF  240
SQMLGSMSCF SA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191725.15e-72PREDICTED: uncharacterized protein LOC109186254
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1544456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.36e-17bHLH family protein