PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000056.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 180aa MW: 19260 Da PI: 8.5275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000056.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Itr_sc000056.1_g00012.1 52 FECKTCNRQFPSFQALGGHRASH 74 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.02E-8	50	119	No hit	No description
Pfam	PF13912	4.5E-13	51	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	52	74	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.827	52	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-10	96	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.28	97	119	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.099	97	119	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVNMNLPMKR GREFDSITAA MANCLMLLSR QHAAAAAGDF SPAPAVAGGR VFECKTCNRQ 60 FPSFQALGGH RASHKRPRLM GDLSLQPPAS PPKPKTHECS ICGVEFALGQ ALGGHMRRHR 120 AVMNNNNESH SSGHGDAPAA AESGGRRALC LDLNLTPLEN DLEFTFGKVA AHHHVVDCSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192386.1	1e-104	PREDICTED: zinc finger protein ZAT11-like
TrEMBL	O22086	3e-65	O22086_PETHY; ZPT2-14
STRING	XP_009593204.1	3e-65	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	8e-41	C2H2 family protein