PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000057.1_g00043.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 75aa    MW: 8208.48 Da    PI: 7.6832
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000057.1_g00043.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB292.6e-0913651060
                    NF-YB 10 ianvsrimkkvlPa..nakiskdaketvqecvsefisfvtseasdkcqrekrk 60
                             i +v+rimk +l    na is+da   vq c+++ i+ ++sea +k++  k k
  Itr_sc000057.1_g00043.1 13 IFEVGRIMKSALNMylNATISEDAITDVQRCITDLIAIISSEAVHKVELVKHK 65
                             5689******9874449***************************998765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-71563IPR009072Histone-fold
SuperFamilySSF471131.68E-61665IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MAKGSPSGHP NFIFEVGRIM KSALNMYLNA TISEDAITDV QRCITDLIAI ISSEAVHKVE  60
LVKHKERGSS SHILT