PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000059.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 260aa    MW: 29044.1 Da    PI: 9.8714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000059.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++WT eE++ l+ +v+++G+g Wk I r        + R+  ++k++w+++
  Itr_sc000059.1_g00032.1  5 KQKWTSEEEKALKAGVAKHGTGKWKNILRDPEfgpslTSRSNIDLKDKWRNL 56
                             79****************************9999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.72161IPR017930Myb domain
SuperFamilySSF466891.0E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-14456IPR009057Homeodomain-like
SMARTSM007175.4E-9459IPR001005SANT/Myb domain
PfamPF002492.9E-9556IPR001005SANT/Myb domain
CDDcd116604.52E-20657No hitNo description
SuperFamilySSF467855.99E-1495159IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-1296164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-1396161IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.37798167IPR005818Linker histone H1/H5, domain H15
PfamPF005388.0E-10100159IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGNQKQKWTS EEEKALKAGV AKHGTGKWKN ILRDPEFGPS LTSRSNIDLK DKWRNLNGNV  60
AAQGSGEKSR ASRGRATTTG AENDAICDPF KSSQENRNVP RYSEMIFEAL SSIKDPNGSD  120
IGAIAGFIEQ RYEVPPNFRR LLSSKMRRLV LQGKVEKVQK CNYMIKDVPV GTRTPSPKKK  180
EVRPRPTQSL TLNMYSKTLL DAAMYAAYRM AEAENKSFLA AEAVKEAERV SKLSEVAESM  240
LQFVTEIYDQ CMEGEVVLLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196722.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A2R6PV911e-116A0A2R6PV91_ACTCH; Single myb histone like
STRINGXP_009795175.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-65MYB_related family protein