PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000060.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 444aa    MW: 50087 Da    PI: 4.4482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000060.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.4e-33141142103
                              HHHHHHHHHCTGGGTTTSEESSSS........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
             HSF_DNA-bind   2 Flkklyeiledeelkeliswseng........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                              Fl k ye+++de+++ lisws+++        +sf+++d ++f +++LpkyFkhsnf+SFvRQLn+YgF+kv++++         w
  Itr_sc000060.1_g00007.1  14 FLLKCYEMVDDESTDALISWSQSQpstadgnnDSFIIWDVSNFCSELLPKYFKHSNFSSFVRQLNIYGFRKVDTDR---------W 90 
                              9********************766667777779*****************************************99.........* PP

                              EEEESXXXXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  80 eFkhksFkkgkkellekikrkkse 103
                              eF++++F +g+k+ll +i r+k++
  Itr_sc000060.1_g00007.1  91 EFANDKFVRGQKHLLASIVRRKNS 114
                              *********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-357105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3010111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5010111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2814111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVKSVENGVS VPPFLLKCYE MVDDESTDAL ISWSQSQPST ADGNNDSFII WDVSNFCSEL  60
LPKYFKHSNF SSFVRQLNIY GFRKVDTDRW EFANDKFVRG QKHLLASIVR RKNSQNVVPK  120
ITTQQEVTKS STTEDDKRLA LWKEVESLKI DKNALMQELI KLRQHQQNSQ SRLLLLREQV  180
KGMEKNQQQM LSFIVMAMQN PGFLLQFLQP KENNWLMAET GSNVLSKVDN KCELAPSNGM  240
LVKYQPPLPH QVAEPICSDP TSDAEKSMEL DFSSNDIEEN DQLTAETGRN NASSEVEHNS  300
ELSPSNGILV KYQSPTHQVA VPKCIEPTPY AEKSTDLDFS LDDIKDLFKN IDIFPGPFDE  360
GFLPSENSDP FAIPDMLDGD DVMDMLLSSP ISERAETNDS RRSEEELEDG IGKGGTTETP  420
PHTTHAGNFE GMDTLTEQMG HTKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221011125129Heat shock factor protein 1
5d5v_B2e-221011125129Heat shock factor protein 1
5d5v_D2e-221011125129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171326.10.0PREDICTED: heat stress transcription factor A-8-like isoform X1
SwissprotQ9S7U55e-80HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A484KPD41e-131A0A484KPD4_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-75heat shock transcription factor A8