PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000061.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 205aa    MW: 22890.8 Da    PI: 7.9658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000061.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.4e-30118754129
                      NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              ++kewyfFs rd+kyatg r+nrat+ gyWk tgkd+++l+  +g++ g++ktLvfy+ rap+g+ktdW+mhe+rle
  Itr_sc000061.1_g00003.1  11 NSKEWYFFSFRDRKYATGYRSNRATSCGYWKGTGKDRRILDPaTGTVLGMRKTLVFYHHRAPHGVKTDWIMHEFRLE 87 
                              678**************************************978889***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.6631105IPR003441NAC domain
SuperFamilySSF1019411.26E-368105IPR003441NAC domain
PfamPF023657.1E-151486IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTFGRYVAKL NSKEWYFFSF RDRKYATGYR SNRATSCGYW KGTGKDRRIL DPATGTVLGM  60
RKTLVFYHHR APHGVKTDWI MHEFRLENPH IPPKEDWVLC RVFQKSKAAG ICDDSIVGAA  120
AGASTSSPNA VNNALLPAGY SPMSGVPAGN VGMAQSKREE DDEYGFFFNV LNCEEPNFQA  180
ADGGVPLWID EDFRFDNGGN GLLFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-28810969172NAC domain-containing protein 19
3swm_B8e-28810969172NAC domain-containing protein 19
3swm_C8e-28810969172NAC domain-containing protein 19
3swm_D8e-28810969172NAC domain-containing protein 19
3swp_A8e-28810969172NAC domain-containing protein 19
3swp_B8e-28810969172NAC domain-containing protein 19
3swp_C8e-28810969172NAC domain-containing protein 19
3swp_D8e-28810969172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178386.11e-125PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE69e-42NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1U8GXW61e-62A0A1U8GXW6_CAPAN; protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A2G2Z6X98e-63A0A2G2Z6X9_CAPAN; Protein CUP-SHAPED COTYLEDON 2
STRINGXP_009800923.11e-62(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-56NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]