PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000061.1_g00025.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 484aa    MW: 53246.1 Da    PI: 6.9362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000061.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13338384455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Itr_sc000061.1_g00025.1 338 NHVEAERQRREKLNQRFYALRAVVPTiS------KMDKASLLGDAIAYIIDLQ 384
                              799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-4135208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.59334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14337388No hitNo description
SuperFamilySSF474592.22E-17337397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17338395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGGVLGSEAV EFFTWLALNN MNSEFSVSGG NLGVQVGLQK IVEGCDWTYA IYWQVAKSKS  60
GKSALIWGDG YCPEATTKKN KDGNGGIDGD KRKQALQMVR ACFGGSEEDW FEGKLDSASD  120
VEMFYLTSMH FVFPFDKPSS PSQSFNSGRT IWVSDAKNCL EHYQSRSHLA KLARFETLVF  180
IPLKAGVVEL GSLKSIPEQQ NVVQMAQKMA VVSNASQAKA IPKIFGRELS LECPNLGAIN  240
TSYPPKAEEE PGYPSNAYEL QALGNNQVFG NSSNGYRSDD GDGKLPRQAN QVIGGDLSSQ  300
AIMSGFELAK ENASLEPNER KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV  360
VPTISKMDKA SLLGDAIAYI IDLQAKIRAM EAGEEMKDGP QRQNAVPDID FCQRRDDAVI  420
RIGCSLDAHP VSRVVKAFRQ HQVMAHESSV SVTENDEVVH TFSIRTQGAA VEQLKEKLAA  480
SLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-27332392262Transcription factor MYC2
5gnj_B5e-27332392262Transcription factor MYC2
5gnj_E5e-27332392262Transcription factor MYC2
5gnj_F5e-27332392262Transcription factor MYC2
5gnj_G5e-27332392262Transcription factor MYC2
5gnj_I5e-27332392262Transcription factor MYC2
5gnj_M5e-27332392262Transcription factor MYC2
5gnj_N5e-27332392262Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319327RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178657.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLM1BS130.0M1BS13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-128bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]