PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000061.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 444aa    MW: 49360.2 Da    PI: 10.1314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000061.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32280338259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Itr_sc000061.1_g00031.1 280 QDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGDHNHP 338
                              7*************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.4E-18232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.9E-34267339IPR003657WRKY domain
PROSITE profilePS5081130.32274340IPR003657WRKY domain
SuperFamilySSF1182903.92E-27277339IPR003657WRKY domain
SMARTSM007741.1E-38279339IPR003657WRKY domain
PfamPF031062.7E-27280338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEEIEEANRA AVESCHRVIS LLSQPHDQNQ YAKLALETGE AVHKFKRVVS KLNSTLGHAR  60
VRKVKKIQTP SLPPSILLEN PMCRGDDHHP KALQLLPAIS LEASNQEKGS SGVIKSGLAL  120
GSPSFELNLH GKTPVPLSHQ TPIPSYHFLQ QQQRYQQQQQ QQLKQQAEMI YRRSNSGISL  180
NFDSSTCTPT MSSTRSFISS LSIDGSVANM DGNAFHLIGA SRSADLSSYQ HKKRCSGRGE  240
DGSTKCGSSS RCHCSKKRKH RVKRSIKVPA ISNKLADIPQ DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERC LEDPSMLIVT YEGDHNHPRV PSHLGFEVGR EGGSRRYGSK  360
ERIGVRLSSR CLKGWVLDLA LGALLASTQQ SSHPPDTILG PLSVTAQQVQ TLIRPTIVPC  420
AHIPWEDQWE ERMMVVGWGK KSTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20272341775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178694.10.0PREDICTED: probable WRKY transcription factor 21 isoform X1
RefseqXP_019178695.10.0PREDICTED: probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-112WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A068U8040.0A0A068U804_COFCA; Uncharacterized protein
STRINGXP_009618397.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-87WRKY DNA-binding protein 21