PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000062.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23966.9 Da    PI: 6.967
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000062.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1860112456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++++++eq++ Le+ F  ++++ + ++ +LA++lgL+ rqV vWFqNrRa++k
  Itr_sc000062.1_g00018.1  60 KRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWK 112
                              45899***********************************************9 PP
2HD-ZIP_I/II119.12.4e-3859150293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqvklLE+sF  e+kLe+ rK +la+eLgl+prqvavWFqnrRAR+k+k++E++y++Lk+++++ + e++rLe+ev +L
  Itr_sc000062.1_g00018.1  59 RKRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWKSKRIEEEYSRLKSEHETAVVEKCRLEAEVLKL 144
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l++
  Itr_sc000062.1_g00018.1 145 KEQLSD 150
                              **9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.1854114IPR001356Homeobox domain
SMARTSM003893.3E-1657118IPR001356Homeobox domain
CDDcd000862.47E-1359115No hitNo description
SuperFamilySSF466897.27E-1859123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-1961121IPR009057Homeodomain-like
PfamPF000461.2E-1561112IPR001356Homeobox domain
PRINTSPR000311.3E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.3E-594110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTTNLSNNHL DDPMAMISEY YSGVYTHNFV PEQVEAKPRR RRRKSKGGEG GDGGVEMIRK  60
RKLSDEQVKL LEQSFWDEHK LETGRKDRLA SELGLDPRQV AVWFQNRRAR WKSKRIEEEY  120
SRLKSEHETA VVEKCRLEAE VLKLKEQLSD AEKKIQRMSL ELSDGASAAS PSSSSFSMVS  180
SPPFLGDQFI TGSFDNVFYV PEWDNLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RRRKSK
24161RRKSKGGEGGDGGVEMIRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172978.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232085e-67ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A3Q7F7L42e-75A0A3Q7F7L4_SOLLC; Uncharacterized protein
STRINGSolyc02g085630.2.14e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-57homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]