PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000063.1_g00023.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 267aa MW: 30025.6 Da PI: 6.2563

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000063.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Itr_sc000063.1_g00023.1 86 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.6e-33	86	148	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Itr_sc000063.1_g00023.1 86 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 148 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	82	151	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.094	82	147	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.46E-19	84	151	IPR009057	Homeodomain-like
SMART	SM00389	5.1E-15	84	151	IPR001356	Homeobox domain
CDD	cd00086	1.50E-14	86	148	No hit	No description
Pfam	PF00046	1.8E-19	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEWEKQLPPP QPSQAEELGG GMFVKVMTDE QMEILRKQIA VYATICEQLV DLHKSIASQH 60 DLTGARLGNL YCDPLVTSAG HKITGRQRWT PTPVQLQILE RIFDQGNGTP SKQKIKEITS 120 ELSQHGQISE TNVYNWFQNR RARSKRKQQV TATNNVESEV ETEVESPNDK KTKPEDFQSS 180 HIATSRAEDV CYQNPVVSSA MHSIDPRSSK AEPMFPSEST SKPAGNFGQM SFYGLSNPRM 240 DRQMIGKVEV PGSYNPYLNA EDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185163.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-87	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3Q7F8C3	1e-155	A0A3Q7F8C3_SOLLC; Uncharacterized protein
STRING	Solyc02g082670.2.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-83	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]