PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000065.1_g00034.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 325aa MW: 35869.4 Da PI: 6.9158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000065.1_g00034.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	135	181	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Itr_sc000065.1_g00034.1 135 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 181 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-12	135	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-15	136	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	136	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-13	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.82E-5	145	184	No hit	No description
Gene3D	G3DSA:3.30.70.260	6.6E-4	218	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQQQSSTDAY MGSGAGNTRS DLMFPEVSPV LPWPVQSFNP VTFQTNPVRD HDQFLIPPPP 60 SPYGGLFNRR PPPPGLQFAY DGQTSEHHHH LRLISDTLAG HVVQPGLAAP FGLQAELQKM 120 TAQEIMDAKA LAASKSHSEA ERRRRERINN HLAKLRSLLP STTKTDKASL LAEVIQHVKE 180 LRRQTSIISE TTQIPTEVDE LTVDNTADDD GKVMIRASLC CEDRSDLLPD LIKALKALRL 240 RTLKAEITTV GGRVRNVLFI TGEDGDGDPP SQQSLQHCSI SSIQEALKAV MEKGSGEESG 300 TGNAKRQRTN NINILEQQQQ QHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	145	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180088.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_019180089.1	0.0	PREDICTED: transcription factor bHLH30-like
Refseq	XP_019180090.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-105	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2C9ULA1	1e-145	A0A2C9ULA1_MANES; Uncharacterized protein
STRING	cassava4.1_010668m	1e-145	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	9e-86	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]