PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000067.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 444aa    MW: 47293.2 Da    PI: 5.1266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000067.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31222280259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Itr_sc000067.1_g00006.1 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 280
                              699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109216282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-31218282IPR003657WRKY domain
SuperFamilySSF1182902.88E-26219282IPR003657WRKY domain
SMARTSM007741.4E-37221281IPR003657WRKY domain
PfamPF031069.4E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MCSQFKLHGM ENYQGDLADI VRGSGLAGNA AQEAEPPALP DTWQYSGGDN DNIAAAVMNC  60
YSDHRDFGDP FSHMRDPMMF QELAMPPPPP SAAFFACSDN DLADTAAAAA VSETAASSAV  120
FAPPKLILDE EMKRPACNIF SRMLQISPTS NPPPPGGGGG IACGENIISA ASSSGNAAAG  180
LQISSPRNTG SIKRRKSQAK KVVCVPAPAP ANSRPSGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSQAAKNA  300
AAAKSSLSQT PTPNDTQTDP HDTPPVKEET TTAPEDRAMQ INDLDDFPAA AGGFPQSYKP  360
ALPSSSDDVA AHHHPEDFFA DLGEIESTDP LNLMFSQAFP SGQEKKAAGI AIDDAFNFYD  420
WTDNNNNNNS IQTLGKSDSG QRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25196283280Disease resistance protein RRS1
5w3x_D2e-25196283280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168777.10.0PREDICTED: probable WRKY transcription factor 14 isoform X1
TrEMBLA0A438BWU01e-127A0A438BWU0_VITVI; Putative WRKY transcription factor 14
STRINGcassava4.1_030132m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-71WRKY DNA-binding protein 14