PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000067.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 185aa MW: 19736.8 Da PI: 8.2464

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000067.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.2	1.1e-12	7	30	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ Itr_sc000067.1_g00013.1 7 CNGCRTILLYPRGASNVCCAVCNA 30 **********************97 PP
2	zf-LSD1	46.8	4.7e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV Itr_sc000067.1_g00013.1 46 CGGCRTLLMHPRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	48.9	1.1e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+++ Itr_sc000067.1_g00013.1 84 CGNCRTMLMYPSGAPSVKCAVCHFI 108 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.2E-12	4	32	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.7E-11	7	30	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.4E-17	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.3E-13	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.3E-15	81	110	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-14	84	108	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000303	Biological Process	response to superoxide
GO:0001666	Biological Process	response to hypoxia
GO:0002240	Biological Process	response to molecule of oomycetes origin
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	Biological Process	regulation of ethylene-activated signaling pathway
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010602	Biological Process	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	Biological Process	aerenchyma formation
GO:0043069	Biological Process	negative regulation of programmed cell death

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MQSQVVCNGC RTILLYPRGA SNVCCAVCNA LTPVPPPAME MAQLICGGCR TLLMHPRGAT 60 SVRCSCCHTV NLVPGPNQFA HVNCGNCRTM LMYPSGAPSV KCAVCHFITN VNAGDTRAPI 120 QPHTPNGTAT SSSMTPPTAT TRPQNQTVVV QNPMSVDESG KLRLACSIGK DEYRDDEYLH 180 LKCGK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169877.1	1e-100	PREDICTED: protein LSD1-like isoform X2
Swissprot	Q6ASS2	3e-62	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A1S4DBD8	1e-93	A0A1S4DBD8_TOBAC; protein LOL2-like
TrEMBL	A0A1U7WYC9	1e-93	A0A1U7WYC9_NICSY; protein LOL2-like isoform X1
STRING	XP_009783613.1	2e-94	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	6e-56	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]