PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000067.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 422aa    MW: 46746.8 Da    PI: 8.104
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000067.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-1371127155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Itr_sc000067.1_g00016.1  71 SVYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127
                              78*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1471136IPR016177DNA-binding domain
PfamPF008474.4E-971127IPR001471AP2/ERF domain
PROSITE profilePS5103218.54572135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-1272136IPR001471AP2/ERF domain
SMARTSM003804.5E-1872141IPR001471AP2/ERF domain
PRINTSPR003674.2E-57384IPR001471AP2/ERF domain
PRINTSPR003674.2E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASSSSEPTA KPEGSSGNDV CGGETSETAG PTGSDQLSLY RVLKKAKKER VCTAKERISK  60
MPPCTAGKRS SVYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNLS REDYLASLRR KSSGFSRGIS KYRPLSSSRW  180
DSQFGRLQGA DYFSSKHHGD DVTADNEYVA GYCMDQKIDL SSYIKWWGAS KARQADSYVK  240
GTSEETKHGC SEDTGNEASE LAVQPTEPYE MPRLGLSQKG KSHKSSTTSA MSILSQCAAY  300
KNLQEKVAKK KEKVENDENE NKNTINKIDY GKTIEKSIHD AGTERLGALF GTSVGLTINR  360
NIHPLTPILS APLLTNYNSI DALTDPVLWT SLVPVFPSGS SRATEVTKHE SGSDYTFFPQ  420
ED
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755145e-33HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169107.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X3
SwissprotQ8GWK21e-143AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-128AP2 family protein