PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000067.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 168aa    MW: 18361.8 Da    PI: 8.2045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000067.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.56.5e-45191181100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C +dCv+apyfp +qp+kfanvhk+FGasnv+k+l++lpee+r da+ss+vyeA+ar+rdP+yG++g i++lqqq
  Itr_sc000067.1_g00019.1  19 PCAACKLLRRRCGPDCVFAPYFPGDQPHKFANVHKVFGASNVSKMLQELPEEQRGDAVSSMVYEANARVRDPIYGCAGAISSLQQQ 104
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              l+ l+++la++++e
  Itr_sc000067.1_g00019.1 105 LDVLRTQLAMAQAE 118
                              *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.5418119IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4419116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKESSWKRLS SSPPSSSSPC AACKLLRRRC GPDCVFAPYF PGDQPHKFAN VHKVFGASNV  60
SKMLQELPEE QRGDAVSSMV YEANARVRDP IYGCAGAISS LQQQLDVLRT QLAMAQAEVV  120
HLRVRQAAAM SSSPQNSGSP QSIVMGSQPR GYFELDTDVV DQPGYFYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-47141206112LOB family transfactor Ramosa2.1
5ly0_B2e-47141206112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169114.11e-110PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE98e-61LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1J6IHI21e-84A0A1J6IHI2_NICAT; Lob domain-containing protein 4
TrEMBLA0A1S4CJ262e-84A0A1S4CJ26_TOBAC; LOB domain-containing protein 4-like
TrEMBLA0A1U7XAI82e-84A0A1U7XAI8_NICSY; LOB domain-containing protein 4-like
STRINGXP_009783465.13e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-60LOB domain-containing protein 4