PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000068.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 150aa MW: 17149.2 Da PI: 10.4487

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000068.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.1	1.7e-41	36	121	83	170
YABBY 83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ + ++++ s+ + +++ + +++ ++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihf Itr_sc000068.1_g00001.1 36 RMDYGSSSKYSNRMGMTMRPPITNR--TEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 119 2222222222222222222222222..222358***************************************************** PP YABBY 169 gl 170 gl Itr_sc000068.1_g00001.1 120 GL 121 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.9E-41	14	121	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	61	114	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.3E-5	69	115	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MAAAFQSLSS SSSSPSHWQD HHLHHQVPSY TSPEYRMDYG SSSKYSNRMG MTMRPPITNR 60 TEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 120 LMLESNNQPK IGAAEGTGKH MTHRAALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191632.1	6e-96	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	5e-48	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	9e-68	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-68	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-48	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]