PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000069.1_g00075.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 339aa    MW: 37074.8 Da    PI: 6.4302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000069.1_g00075.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.4e-17236270135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Itr_sc000069.1_g00075.1 236 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 270
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-8127321IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-16230280IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387230266IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15231293No hitNo description
Gene3DG3DSA:3.30.50.106.9E-14231267IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-12235282No hitNo description
PROSITE patternPS003440236261IPR000679Zinc finger, GATA-type
PfamPF003201.3E-14236270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEAREFFTGA GFLGAAAGES QYGCENRYLV EQKSAEHSLN ANNFTVDELF DFSKHEEVTA  60
DDFFDSVAGR SSTVAGVDSC NSSVSGGQFS GNFSCGSFTD AAFSASELCV PYDDLADLEW  120
LSNFVEDSFS SDEVQNLQLI LATKTSAVAD SSSSGNCKEI ANNYSLPAFP SDVSVPGKAR  180
SKRSRAAPWD WSSRLQLLSP AKSQSESNNN NESAPKASKT TPSKRRESTD TQGRKCLHCA  240
SEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVSTKHSNS HRKVLELRRQ  300
KDLHLHHQQQ LLSQASIFGG DAYLLHHQQT CDPDYTHII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193034.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A1S4A1G81e-140A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-70GATA transcription factor 9