PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000070.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 354aa    MW: 38293.1 Da    PI: 7.6918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000070.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.2e-19273307135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Itr_sc000070.1_g00002.1 273 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 307
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.04E-14266329No hitNo description
SMARTSM004017.4E-17267321IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543267303IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14271305IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.61E-14272329No hitNo description
PfamPF003208.8E-17273307IPR000679Zinc finger, GATA-type
PROSITE patternPS003440273298IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLYRTQHHSF LNPFTFSLTP PPPPPSSAVS VQGMECALKS CVRPEMAAKT AAHAVGCLEN  60
EFPAVGGGGG EDFSVDDLLD LSNGFSEEYE EKTEVPEGKD GENSSLVLVS VVPEKRQEET  120
VGVSFCIEKD FSCFPGGELN APADDLDSLE WLSHFVEEDS FSGYSLTYPA GKLPPLPENK  180
NRVQAQIPVR DNPSFTTPVQ TKARSKRART GVRVWLSGSP SLTESSTSSS SSTMSSSPPH  240
PFLTAESLIG IPPAKKQKKK PTQTAAAGQP RRCSHCGVQK TPQWRAGPLG AKTLCNACGV  300
RFKSGRLLPE YRPACSPTFS SQLHSNNHRK VLEMRRKKES EASPGFAPPP VQSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182720.11e-178PREDICTED: GATA transcription factor 5-like
RefseqXP_019182721.11e-178PREDICTED: GATA transcription factor 5-like
TrEMBLA0A328E4W21e-125A0A328E4W2_9ASTE; GATA transcription factor
STRINGXP_009761911.11e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-59GATA transcription factor 5