PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000071.1_g00035.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 223aa MW: 23095.2 Da PI: 8.2297

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000071.1_g00035.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.8e-39	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++C++apyf ++q ++ fa vhk+FGasnv+kll+++p+++r da+ ++++eA+ar+rdPvyG+v++i+++qq Itr_sc000071.1_g00035.1 27 PCGACKFLRRKCVAGCIFAPYFDSDQgASVFASVHKVFGASNVSKLLHHIPPHKRLDAVITVCFEAQARLRDPVYGCVAHIFAIQQ 112 7*********************99889***************************************************** PP DUF260 86 qleqlkaelallkee 100 q+ +l+ael+ l+++ Itr_sc000071.1_g00035.1 113 QVVNLQAELSFLQAH 127 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.055	26	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-38	27	125	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSLNCSSTGS GGGGSGGGGG GGGGGGPCGA CKFLRRKCVA GCIFAPYFDS DQGASVFASV 60 HKVFGASNVS KLLHHIPPHK RLDAVITVCF EAQARLRDPV YGCVAHIFAI QQQVVNLQAE 120 LSFLQAHLAS LQVPTPPPPP PPPMSAAINI ADLSTVSPAA YDTLSSLFDP TSLTTVQAAW 180 APPVQQTRHF NRDPAESSSS PPAGSGVLQE LTRHLMRRPP QGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	23	128	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	23	128	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158984.1	4e-99	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	7e-67	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A484M5G7	3e-77	A0A484M5G7_9ASTE; Uncharacterized protein
STRING	XP_009795320.1	1e-75	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-67	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]