PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00058.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 392aa    MW: 41205.4 Da    PI: 6.8194
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00058.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.34.9e-24180228149
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                              +Cq+egC+adl++ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrf
  Itr_sc000071.1_g00058.1 180 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAGGLTQRFCQQCSRF 228
                              6***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.2E-25175228IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.008178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-23179230IPR004333Transcription factor, SBP-box
PfamPF031103.9E-17181228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MNERDAMLDY EWGNQSATVM FSGDETAAAA AAQSHRQFFD PYGGQQPGFD DGAGAGGSLV  60
GPSAHFAGAD HLQLFGEPAA QENTAHLCSL YDPRAYGGAF QHGSHHQVPL LSLETAGAGG  120
FVVVPKSEPL PAAAADFSGA GLGLNLGGRT YFSSAAEDDF VNRLYRRSRA VDSGSFNTPR  180
CQAEGCNADL THAKHYHRRH KVCEFHSKAA TVIAGGLTQR FCQQCSRFVG CLSVQKTPYS  240
ANKDYLENDG NVLGYTSHPN YWFFNSRGDP EGIPVHSTSC RNSITANGAA AAAWPTTTAA  300
AGKTPNNQTV TPPSATLIFL IMPKIPPPTA LQCTLGSPSD SGAHSSPSVT VAVSPPRMSI  360
DCFGQRSYGY MSNATAAGSS AASASSFFYS HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-19181228653squamosa promoter-binding protein-like 12
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-32AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159548.11e-144PREDICTED: squamosa promoter-binding-like protein 8 isoform X1
TrEMBLA0A328DPE91e-101A0A328DPE9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48462341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-52squamosa promoter binding protein-like 8