PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00062.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 220aa    MW: 23601.1 Da    PI: 7.2359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00062.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1866116256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr +  +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g+
  Itr_sc000071.1_g00062.1  66 SYSGVRKRI-WGKWVSEIREPKK---KSRIWLGTYPTPEMAARAHDVAALAIKGH 116
                              79****887.**********854...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1365116IPR001471AP2/ERF domain
CDDcd000184.41E-3165125No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3066124IPR001471AP2/ERF domain
SMARTSM003802.2E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2066124IPR016177DNA-binding domain
PROSITE profilePS5103222.61666123IPR001471AP2/ERF domain
PRINTSPR003677.6E-96778IPR001471AP2/ERF domain
PRINTSPR003677.6E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEEEHAITTP PCSSSATSSS ANSDGSNSPA AATFPKKGMK RGKEGKGGDE KEKRRKNAGA  60
DSKYPSYSGV RKRIWGKWVS EIREPKKKSR IWLGTYPTPE MAARAHDVAA LAIKGHSASL  120
NFPHLAHHLP RPASTSPKDI QAAAARAAAT TFPSTDGGDN GGEPRAAENT QQHFPTTNVD  180
DDTVFDLPDL SLMDDEYGQI SPSPLAGNNA GFQLDEPFLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1659124773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440PKKGMKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158972.11e-125PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2G9GT813e-59A0A2G9GT81_9LAMI; Uncharacterized protein
STRINGXP_009771308.12e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]