PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000071.1_g00074.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 253aa    MW: 28137.8 Da    PI: 6.3517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000071.1_g00074.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-16121171255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+++AeIrdp  +g   r++lg++  +e+Aa a+++a+ k++g
  Itr_sc000071.1_g00074.1 121 RFRGVRRRP-WGKFAAEIRDPERRG--FRIWLGTYEKPEDAALAYDRAAYKMRG 171
                              69*******.**********84444..9************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.327121179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-30121180IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22121180IPR016177DNA-binding domain
PfamPF008473.8E-11121171IPR001471AP2/ERF domain
SMARTSM003801.4E-33121185IPR001471AP2/ERF domain
PRINTSPR003671.2E-12122133IPR001471AP2/ERF domain
CDDcd000181.39E-23129181No hitNo description
PRINTSPR003671.2E-12161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNQENLSSSD LSLLESISQH LLNDSDFDDL SSYELTDSSD SHVLSSYELT DSTHSHDSSF  60
DFSDLLSRTN SSYELTDSTN SSHELTDSTS DHDSSSHPGN EVANEGRAVA RGSEAAGDWR  120
RFRGVRRRPW GKFAAEIRDP ERRGFRIWLG TYEKPEDAAL AYDRAAYKMR GSRAVLNFPH  180
LIGSPDAPEP VRVRPRRRLQ SSPAHAPPSS SVESQSPKRR RKIELINAVA KANLMNAISG  240
IQLGHSPLLT PNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-28122186670ATERF1
3gcc_A9e-28122186670ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159009.11e-110PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A2G2XMS41e-53A0A2G2XMS4_CAPBA; Ethylene-responsive transcription factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-28ethylene-responsive element binding factor 13