PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000072.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YA

Protein Properties

Length: 207aa MW: 23039.4 Da PI: 7.9111

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000072.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	114	170	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheSRh hAlrR+Rg+gGrF Itr_sc000072.1_g00002.1 114 EEPVFVNAKQYHGILRRRQSRAKAESENKL-LKARKPYLHESRHLHALRRARGCGGRF 170 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.9E-36	112	173	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.835	113	173	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-27	115	170	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	116	138	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	118	138	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	147	170	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTSSSIHELS DNSETEQQQK HSEHEIQSSS PSNLMPHSAT IAPAMHYAIP PQNGNGNAMA 60 HTVYPYPDPY YRSIFAPYDA QPYAAQPYPS QPMVHLQLMG TQQAGVPLPS DAVEEPVFVN 120 AKQYHGILRR RQSRAKAESE NKLLKARKPY LHESRHLHAL RRARGCGGRF TSKKNENQQT 180 QEESGHKSPP NVNLNSESSD NGSELAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	113	177	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170343.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019170344.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019170345.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019170346.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019170347.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_019170349.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S3ZJW1	1e-101	A0A1S3ZJW1_TOBAC; nuclear transcription factor Y subunit A-7 isoform X4
STRING	VIT_10s0003g04650.t01	1e-100	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-64	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]