PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000074.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 774aa    MW: 87113.4 Da    PI: 7.0438
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000074.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.64e-24959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i++ s rqvtf+kRr g++KKA+E+S+LCd+e  +i+fs tgkl eyss
  Itr_sc000074.1_g00018.1  9 KKIDSLSARQVTFAKRRRGLFKKAHEISTLCDVELGLIVFSATGKLSEYSS 59
                             6899*********************************************96 PP
2K-box34.21.1e-121021512170
                    K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                              +a L ke++   r +R+l+GedL++L +++L +Le+q+e++l+++ + K 
  Itr_sc000074.1_g00018.1 102 HAMLLKEYKDKDRHLRQLKGEDLQELGMEDLIRLEKQMERGLSRVQKSKA 151
                              455566666667899******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.801161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-27385IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.91E-33374No hitNo description
PRINTSPR004043.9E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.67695194IPR002487Transcription factor, K-box
PfamPF014863.1E-997151IPR002487Transcription factor, K-box
Gene3DG3DSA:3.50.50.602.9E-49315365IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519052.07E-54316612IPR023753FAD/NAD(P)-binding domain
PfamPF009963.0E-213316753IPR018203GDP dissociation inhibitor
PRINTSPR008913.6E-62321339IPR018203GDP dissociation inhibitor
PRINTSPR008929.6E-63331343IPR000806Rab GDI protein
PRINTSPR008913.6E-62339356IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.30.519.102.9E-51366553No hitNo description
PRINTSPR008913.6E-62384401IPR018203GDP dissociation inhibitor
PRINTSPR008929.6E-63390403IPR000806Rab GDI protein
PRINTSPR008913.6E-62401417IPR018203GDP dissociation inhibitor
PRINTSPR008929.6E-63440455IPR000806Rab GDI protein
PRINTSPR008913.6E-62450465IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.50.50.602.9E-49554659IPR023753FAD/NAD(P)-binding domain
PRINTSPR008913.6E-62555576IPR018203GDP dissociation inhibitor
PRINTSPR008929.6E-63605619IPR000806Rab GDI protein
SuperFamilySSF543734.32E-39617713No hitNo description
PRINTSPR008929.6E-63648664IPR000806Rab GDI protein
PRINTSPR008929.6E-63673691IPR000806Rab GDI protein
PRINTSPR008929.6E-63706725IPR000806Rab GDI protein
SuperFamilySSF519059.71E-12715753IPR023753FAD/NAD(P)-binding domain
PRINTSPR008929.6E-63727747IPR000806Rab GDI protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0015031Biological Processprotein transport
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005093Molecular FunctionRab GDP-dissociation inhibitor activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MVRQKIEIKK IDSLSARQVT FAKRRRGLFK KAHEISTLCD VELGLIVFSA TGKLSEYSSS  60
SMVQVLARHN MHSEKNENDL EHHHHHHPQP PLQLQQDNRC THAMLLKEYK DKDRHLRQLK  120
GEDLQELGME DLIRLEKQME RGLSRVQKSK AGFCYFSLII LLCVFLAIRL FGHVPVVKTD  180
NNDQHIAEEE LVSFSGDVLV VVFSFRHRNT AITSHALSAN RPGFSIQFRM KNPSSLLPNT  240
SQEWLMGSSM AAQEDKPPPD QQGQSDDSIA KTYNNSDTFL TLGKACMHEA ISTSTTISSL  300
TVYELEDSPS QRISNMDEEY DVIVLGTGLK ECIISGLLSV DGLKVLHMDK NDYYGGESTS  360
LNLVQLWKRL RGTDKPAENL GASKEYNVDM IPKFMMANGA LVRVLIHTKV TKYLNFKAVD  420
GSFVYNKGKV YKVPATDVEA LKSSLMGLFE KRRARKFFIY VQEFDEADPK THHGMNLNTI  480
TAKQFIAKYE LEDNTIDFIG HALALQTDDK YLEQPAIDFV KKVKDKSLCI DIHELYAESL  540
ARFQAGSPYI YPMYGLGELP QGFARLSAVY GGTYMLNKPE CKVEFDESGK AYGVTSEGET  600
AKCKKVVCDP SYLTDKVKKV GKVSRAICIM SHPIPHTHDS HSAQVILPQK QLGRKSDMYL  660
FCCSYSHNIA PKGKYIAFVL TEAETDNPEA ELKPGVDLLG PVDEIFYETY DRYVPINDSA  720
ADNCFISASY DASTHFESTV QDVLAMYTKI TGKVSAKFFA SKHNQNEVPL SSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gnd_A1e-1763167681441GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169204.10.0PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor At5g09550-like
RefseqXP_019169205.10.0PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor At5g09550-like
SwissprotQ9LXC00.0GDI_ARATH; Guanosine nucleotide diphosphate dissociation inhibitor At5g09550
TrEMBLA0A484LZ680.0A0A484LZ68_9ASTE; Guanosine nucleotide diphosphate dissociation inhibitor
STRINGXP_009790990.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.18e-40AGAMOUS-like 24
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Holmes-Davis R,Tanaka CK,Vensel WH,Hurkman WJ,McCormick S
    Proteome mapping of mature pollen of Arabidopsis thaliana.
    Proteomics, 2005. 5(18): p. 4864-84
    [PMID:16247729]
  3. Ge W, et al.
    Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
    Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
    [PMID:21798377]